If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ), 'gf_id' => 'HOM05D000812', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000812' ), 'data_identifier' => 'HOM05D000812', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000812', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '727', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p33030' => 'bna', 'A02p42380' => 'bna', 'A04p04060' => 'bna', 'A04p19260' => 'bna', 'A04p26940' => 'bna', 'A05p05630' => 'bna', 'A05p10220' => 'bna', 'A06p29220' => 'bna', 'A06p38210' => 'bna', 'A07p13840' => 'bna', 'A07p36820' => 'bna', 'A08p00970' => 'bna', 'A08p09300' => 'bna', 'A09p01150' => 'bna', 'A09p33940' => 'bna', 'A09p41120' => 'bna', 'Aa31LG11G1120' => 'aar', 'Aa31LG2G13770' => 'aar', 'Aa31LG4G10500' => 'aar', 'Aa31LG4G13640' => 'aar', 'Aa31LG7G7600' => 'aar', 'Aa31LG9G15500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.326' => 'aag', 'Actinidia01320' => 'ach', 'Actinidia01703' => 'ach', 'Actinidia10249' => 'ach', 'Actinidia14780' => 'ach', 'Actinidia14781' => 'ach', 'Actinidia18129' => 'ach', 'Actinidia18130' => 'ach', 'Actinidia18134' => 'ach', 'Actinidia19097' => 'ach', 'Actinidia19321' => 'ach', 'Actinidia27787' => 'ach', 'Actinidia33069' => 'ach', 'Ah.11g043640' => 'amhyb', 'AL1G37310' => 'aly', 'AL1G46370' => 'aly', 'AL2G29810' => 'aly', 'AL4G31560' => 'aly', 'AL5G26990' => 'aly', 'AL8G39410' => 'aly', 'Aqoxy1G03562' => 'aox', 'Aqoxy3G01040' => 'aox', 'Aqoxy3G02185' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5I9E9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7WJT5G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGQF31' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HH247V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HIE0E0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IWD684' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S65KYS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0ST4M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y0DKQF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z62NC6' => 'arhy', 'AT1G23550' => 'ath', 'AT1G32230' => 'ath', 'AT1G70440' => 'ath', 'AT2G35510' => 'ath', 'AT3G47720' => 'ath', 'AT5G62520' => 'ath', 'ATR0598G072' => 'atr', 'ATR0705G170' => 'atr', 'ATR0730G191' => 'atr', 'ATR0767G263' => 'atr', 'ATR0829G078' => 'atr', 'Atru.chr11.2038' => 'acertr', 'Atru.chr11.2039' => 'acertr', 'Atru.chr12.1794' => 'acertr', 'Atru.chr13.403' => 'acertr', 'Atru.chr13.912' => 'acertr', 'Atru.chr3.2904' => 'acertr', 'Atru.chr3.3732' => 'acertr', 'Atru.chr6.1521' => 'acertr', 'Atru.chr9.2478' => 'acertr', 'AUR62008209' => 'cqu', 'AUR62008211' => 'cqu', 'AUR62020715' => 'cqu', 'AUR62028007' => 'cqu', 'AUR62030961' => 'cqu', 'AUR62030963' => 'cqu', 'BcaB02g09654' => 'bca', 'BcaB03g13750' => 'bca', 'BcaB03g14144' => 'bca', 'BcaB03g14803' => 'bca', 'BcaB04g17989' => 'bca', 'BcaB06g28846' => 'bca', 'BcaB07g29843' => 'bca', 'BcaB07g29844' => 'bca', 'BcaB07g29845' => 'bca', 'BcaB07g32345' => 'bca', 'BcaB07g32898' => 'bca', 'BcaC01g00295' => 'bca', 'BcaC01g02483' => 'bca', 'BcaC02g07707' => 'bca', 'BcaC02g11656' => 'bca', 'BcaC03g16338' => 'bca', 'BcaC03g17163' => 'bca', 'BcaC03g18157' => 'bca', 'BcaC03g18162' => 'bca', 'BcaC05g26277' => 'bca', 'BcaC05g27256' => 'bca', 'BcaC05g27903' => 'bca', 'BcaC06g35043' => 'bca', 'BcaC07g37627' => 'bca', 'BcaC08g46487' => 'bca', 'BcaC09g49365' => 'bca', 'BcaC09g50781' => 'bca', 'BolC1t02018H' => 'bol', 'BolC2t11173H' => 'bol', 'BolC2t12284H' => 'bol', 'BolC3t18685H' => 'bol', 'BolC3t20060H' => 'bol', 'BolC4t22915H' => 'bol', 'BolC4t27920H' => 'bol', 'BolC5t30987H' => 'bol', 'BolC5t31889H' => 'bol', 'BolC5t32647H' => 'bol', 'BolC6t39500H' => 'bol', 'BolC7t42560H' => 'bol', 'BolC8t47212H' => 'bol', 'BolC8t47997H' => 'bol', 'BolC8t50163H' => 'bol', 'BraA02t09169Z' => 'bra', 'BraA04t18193Z' => 'bra', 'BraA05t19962Z' => 'bra', 'BraA06t25878Z' => 'bra', 'BraA06t26736Z' => 'bra', 'BraA07t29138Z' => 'bra', 'BraA07t31248Z' => 'bra', 'BraA08t32928Z' => 'bra', 'BraA09t38941Z' => 'bra', 'BraA09t39605Z' => 'bra', 'C01p20910' => 'bna', 'C02p23470' => 'bna', 'C02p41630' => 'bna', 'C02p50860' => 'bna', 'C02p62270' => 'bna', 'C03p33210' => 'bna', 'C03p64310' => 'bna', 'C03p77990' => 'bna', 'C04p12670' => 'bna', 'C04p64330' => 'bna', 'C05p22890' => 'bna', 'C05p31640' => 'bna', 'C05p39110' => 'bna', 'C06p30250' => 'bna', 'C06p44300' => 'bna', 'C07p20390' => 'bna', 'C07p23660' => 'bna', 'CAN.G137.9' => 'can', 'CAN.G416.54' => 'can', 'CAN.G416.56' => 'can', 'CAN.G474.21' => 'can', 'CAN.G726.21' => 'can', 'CAN.G781.8' => 'can', 'CANSAT01G0262' => 'cansat', 'CANSAT25G0250' => 'cansat', 'CARHR023980' => 'chi', 'CARHR031600' => 'chi', 'CARHR063610' => 'chi', 'CARHR129660' => 'chi', 'CARHR129670' => 'chi', 'CARHR129680' => 'chi', 'CARHR156400' => 'chi', 'CARHR276300' => 'chi', 'Carub.0001s2309' => 'cru', 'Carub.0001s3056' => 'cru', 'Carub.0002s1713' => 'cru', 'Carub.0004s1720' => 'cru', 'Carub.0005s1385' => 'cru', 'Carub.0008s2319' => 'cru', 'Ca_04535_v3' => 'car', 'Ca_15560_v3' => 'car', 'Ca_16178_v3' => 'car', 'Ca_17858_v3' => 'car', 'Ca_21919_v3' => 'car', 'Ca_25186_v3' => 'car', 'CBR_g16983' => 'cbr', 'CBR_g19059' => 'cbr', 'Cc04_g14100' => 'ccan', 'Cc08_g03250' => 'ccan', 'Cc08_g03260' => 'ccan', 'Cc10_g07950' => 'ccan', 'CDE02G0760' => 'cde', 'CDE02G1735' => 'cde', 'CDE04G2959' => 'cde', 'CDE05G0084' => 'cde', 'CDE05G0589' => 'cde', 'CDE05G2161' => 'cde', 'CDE05G2474' => 'cde', 'CDE05G3655' => 'cde', 'CDE06G0480' => 'cde', 'CDE08G1268' => 'cde', 'CDE09G1170' => 'cde', 'CDE11G0190' => 'cde', 'Cfa009153' => 'cfa', 'Cfa012518' => 'cfa', 'Cfa012520' => 'cfa', 'Cfa019133' => 'cfa', 'Ciclev10001062m.g' => 'ccl', 'Ciclev10020868m.g' => 'ccl', 'Ciclev10032827m.g' => 'ccl', 'CiPaw.06G071500' => 'cil', 'CiPaw.11G026200' => 'cil', 'CiPaw.11G098300' => 'cil', 'CiPaw.12G026600' => 'cil', 'CiPaw.12G067900' => 'cil', 'CiPaw.12G068000' => 'cil', 'CiPaw.16G102500' => 'cil', 'ClCG01G013140' => 'cla', 'ClCG08G011980' => 'cla', 'ClCG09G011650' => 'cla', 'COL.COLO4_16946' => 'col', 'COL.COLO4_24174' => 'col', 'COL.COLO4_30038' => 'col', 'Cpa.g.sc2055.2' => 'cpa', 'Cpa.g.sc208.10' => 'cpa', 'Cpa.g.sc76.55' => 'cpa', 'CsaV3_1G008470' => 'csa', 'CsaV3_2G030570' => 'csa', 'CsaV3_3G001370' => 'csa', 'CsaV3_3G048860' => 'csa', 'CSS0005047' => 'camsi', 'CSS0014618' => 'camsi', 'CSS0017926' => 'camsi', 'CSS0018379' => 'camsi', 'CSS0018742' => 'camsi', 'CSS0018934' => 'camsi', 'CSS0023620' => 'camsi', 'CSS0023806' => 'camsi', 'CSS0031991' => 'camsi', 'CSS0034947' => 'camsi', 'CSS0036271' => 'camsi', 'CSS0038046' => 'camsi', 'CSS0042108' => 'camsi', 'CSS0046935' => 'camsi', 'DCAR_004272' => 'dca', 'DCAR_008225' => 'dca', 'DCAR_020039' => 'dca', 'DCAR_024452' => 'dca', 'DCAR_026135' => 'dca', 'DCAR_031317' => 'dca', 'Dinv02892' => 'din', 'Dinv15286' => 'din', 'Dinv20653' => 'din', 'Dinv24842' => 'din', 'Dinv25256' => 'din', 'Dinv25257' => 'din', 'Dinv29000' => 'din', 'Dinv29001' => 'din', 'Dinv44910' => 'din', 'Duzib041G0205' => 'dzi', 'Duzib068G1124' => 'dzi', 'Duzib116G0392' => 'dzi', 'Duzib116G0943' => 'dzi', 'Duzib205G1904' => 'dzi', 'Duzib205G2052' => 'dzi', 'Duzib248G1483' => 'dzi', 'Duzib268G0432' => 'dzi', 'Duzib268G0466' => 'dzi', 'ECA232G4399' => 'eca', 'ECA233G0848' => 'eca', 'ECA233G4153' => 'eca', 'ECA246G0693' => 'eca', 'ECA246G4166' => 'eca', 'EL10Ac1g02322' => 'bvu', 'EL10Ac2g03636' => 'bvu', 'EL10Ac2g04282' => 'bvu', 'EL10Ac5g10744' => 'bvu', 'EL10Ac5g10746' => 'bvu', 'Eucgr.B00305' => 'egr', 'Eucgr.B00313' => 'egr', 'Eucgr.B00314' => 'egr', 'Eucgr.E00230' => 'egr', 'Eucgr.F00472' => 'egr', 'Eucgr.G00207' => 'egr', 'Eucgr.G00209' => 'egr', 'FAN02G3532' => 'fan', 'FAN04G0346' => 'fan', 'FAN04G1163' => 'fan', 'FAN04G2405' => 'fan', 'FAN04G2983' => 'fan', 'FAN05G3847' => 'fan', 'FAN05G4795' => 'fan', 'FAN07G2140' => 'fan', 'FAN08G0340' => 'fan', 'FAN08G1346' => 'fan', 'FAN08G1864' => 'fan', 'FAN09G4403' => 'fan', 'FAN10G0106' => 'fan', 'FAN10G0537' => 'fan', 'FAN11G3004' => 'fan', 'FAN12G1661' => 'fan', 'FAN13G1341' => 'fan', 'FAN13G2070' => 'fan', 'FAN13G2823' => 'fan', 'FAN13G3144' => 'fan', 'FAN14G3117' => 'fan', 'FAN16G2278' => 'fan', 'FAN17G1730' => 'fan', 'FAN18G0809' => 'fan', 'FAN18G0816' => 'fan', 'FAN18G1054' => 'fan', 'FAN18G1679' => 'fan', 'FAN18G1988' => 'fan', 'FAN18G3293' => 'fan', 'FAN18G4384' => 'fan', 'FAN19G1655' => 'fan', 'FAN19G1877' => 'fan', 'FAN21G3672' => 'fan', 'FAN22G0184' => 'fan', 'FAN23G1631' => 'fan', 'FAN23G2233' => 'fan', 'FAN25G1868' => 'fan', 'FvH4_1g15180' => 'fve', 'FvH4_1g15250' => 'fve', 'FvH4_3g18240' => 'fve', 'FvH4_4g34350' => 'fve', 'FvH4_5g05320' => 'fve', 'FvH4_5g23020' => 'fve', 'FvH4_5g23040' => 'fve', 'FvH4_5g33460' => 'fve', 'FvH4_6g03610' => 'fve', 'Glyma.01G015000' => 'gma', 'Glyma.01G015200' => 'gma', 'Glyma.04G183100' => 'gma', 'Glyma.05G037700' => 'gma', 'Glyma.05G165451' => 'gma', 'Glyma.08G123000' => 'gma', 'Glyma.09G207200' => 'gma', 'Glyma.17G089400' => 'gma', 'Gohir.A05G214300' => 'ghi', 'Gohir.A05G263800' => 'ghi', 'Gohir.A08G153800' => 'ghi', 'Gohir.A12G142900' => 'ghi', 'Gohir.A12G206300' => 'ghi', 'Gohir.A12G274100' => 'ghi', 'Gohir.D05G217500' => 'ghi', 'Gohir.D05G266100' => 'ghi', 'Gohir.D08G174700' => 'ghi', 'Gohir.D12G147700' => 'ghi', 'Gohir.D12G208700' => 'ghi', 'Gohir.D12G274800' => 'ghi', 'Gorai.004G182400' => 'gra', 'Gorai.008G130400' => 'gra', 'Gorai.008G158900' => 'gra', 'Gorai.008G224200' => 'gra', 'Gorai.008G295300' => 'gra', 'Gorai.009G224400' => 'gra', 'Gorai.009G278000' => 'gra', 'GSVIVG01007754001' => 'vvi', 'GSVIVG01009262001' => 'vvi', 'GSVIVG01013086001' => 'vvi', 'GSVIVG01013090001' => 'vvi', 'GSVIVG01013740001' => 'vvi', 'HanXRQChr04g0098991' => 'han', 'HanXRQChr06g0172751' => 'han', 'HanXRQChr09g0272181' => 'han', 'HanXRQChr12g0371381' => 'han', 'HanXRQChr13g0395501' => 'han', 'HanXRQChr14g0455421' => 'han', 'HanXRQChr16g0504031' => 'han', 'HanXRQChr17g0538331' => 'han', 'Haze_07472' => 'cav', 'Haze_08143' => 'cav', 'Haze_08144' => 'cav', 'Haze_12186' => 'cav', 'Haze_19022' => 'cav', 'Hma1.2p1_0160F.1_g070920' => 'hma', 'Hma1.2p1_0341F.1_g130350' => 'hma', 'Hma1.2p1_0536F.1_g173990' => 'hma', 'Hma1.2p1_1027F.1_g249470' => 'hma', 'Hma1.2p1_1068F.1_g254030' => 'hma', 'Hma1.2p1_1569F.1_g291230' => 'hma', 'HPP92_001517' => 'vpl', 'HPP92_006036' => 'vpl', 'HPP92_007718' => 'vpl', 'HPP92_014844' => 'vpl', 'HPP92_014847' => 'vpl', 'HPP92_020899' => 'vpl', 'HPP92_024956' => 'vpl', 'Hund02743' => 'sun', 'Hund05248' => 'sun', 'Hund09338' => 'sun', 'Lalb_Chr05g0216311' => 'lal', 'Lalb_Chr09g0325491' => 'lal', 'Lalb_Chr11g0071321' => 'lal', 'Lalb_Chr12g0201581' => 'lal', 'Lalb_Chr16g0381101' => 'lal', 'Lj1g0007843' => 'lja', 'Lj1g0010161' => 'lja', 'Lj2A231T46' => 'lonja', 'Lj2A231T47' => 'lonja', 'Lj2g0005786' => 'lja', 'Lj2g0011797' => 'lja', 'Lj2g0020551' => 'lja', 'Lj2g0027449' => 'lja', 'Lj3A1053T42' => 'lonja', 'Lj4A79T58' => 'lonja', 'Lj4g0003508' => 'lja', 'Lj4g0011605' => 'lja', 'Lj4g0011780' => 'lja', 'Lj4g0017429' => 'lja', 'Lj4g0021393' => 'lja', 'Lj4g0023939' => 'lja', 'Lj5A124T71' => 'lonja', 'Lj5g0002999' => 'lja', 'Lj5g0025253' => 'lja', 'Lj8A309G35' => 'lonja', 'Lj8A310G25' => 'lonja', 'Lj9A449T43' => 'lonja', 'Lsat_1_v5_gn_3_19200' => 'lsa', 'Lsat_1_v5_gn_4_75180' => 'lsa', 'Lsat_1_v5_gn_5_5001' => 'lsa', 'Lsat_1_v5_gn_6_3701' => 'lsa', 'Lsat_1_v5_gn_8_155541' => 'lsa', 'Lsat_1_v5_gn_8_156380' => 'lsa', 'Manes.06G104901' => 'mes', 'Manes.07G078500' => 'mes', 'Manes.10G069300' => 'mes', 'Manes.12G028100' => 'mes', 'Manes.13G029600' => 'mes', 'Manes.14G065700' => 'mes', 'Manes.18G053100' => 'mes', 'Mapoly0073s0044' => 'mpo', 'MBI01_g10118_MAGBIO' => 'mbi', 'MBI04_g07012_MAGBIO' => 'mbi', 'MBI04_g32199_MAGBIO' => 'mbi', 'MBI04_g41168_MAGBIO' => 'mbi', 'MBI04_g41169_MAGBIO' => 'mbi', 'MBI04_g44376_MAGBIO' => 'mbi', 'MBI16_g21162_MAGBIO' => 'mbi', 'MBI16_g21163_MAGBIO' => 'mbi', 'MBI16_g21164_MAGBIO' => 'mbi', 'MBI16_g26735_MAGBIO' => 'mbi', 'MBI16_g27099_MAGBIO' => 'mbi', 'MD02G1259200' => 'mdo', 'MD06G1173800' => 'mdo', 'MD07G1061500' => 'mdo', 'MD08G1211300' => 'mdo', 'MD08G1211400' => 'mdo', 'MD13G1092800' => 'mdo', 'MD14G1180300' => 'mdo', 'MD16G1093700' => 'mdo', 'Medtr1g011730' => 'mtr', 'Medtr1g011740' => 'mtr', 'Medtr1g112330' => 'mtr', 'Medtr2g090130' => 'mtr', 'Medtr3g077870' => 'mtr', 'Medtr4g105740' => 'mtr', 'Medtr5g029580' => 'mtr', 'Medtr5g032190' => 'mtr', 'Medtr7g011550' => 'mtr', 'Medtr7g011880' => 'mtr', 'Medtr7g061850' => 'mtr', 'Medtr8g088250' => 'mtr', 'MELO3C002263.2' => 'cme', 'MELO3C003437.2' => 'cme', 'MELO3C011118.2' => 'cme', 'MELO3C013824.2' => 'cme', 'Migut.D01931' => 'egut', 'Migut.L01423' => 'egut', 'Migut.N00926' => 'egut', 'Migut.N02819' => 'egut', 'MSTRG.11452' => 'ama', 'MSTRG.12175' => 'ama', 'MSTRG.24847' => 'ama', 'MSTRG.4372' => 'ama', 'MSTRG.590' => 'ama', 'MSTRG.9676' => 'ama', 'Nitab4.5_0000025g0590' => 'nta', 'Nitab4.5_0000059g0570' => 'nta', 'Nitab4.5_0000109g0020' => 'nta', 'Nitab4.5_0000191g0160' => 'nta', 'Nitab4.5_0000203g0240' => 'nta', 'Nitab4.5_0000556g0260' => 'nta', 'Nitab4.5_0000646g0020' => 'nta', 'Nitab4.5_0000700g0050' => 'nta', 'Nitab4.5_0001483g0030' => 'nta', 'Nitab4.5_0001614g0020' => 'nta', 'Nitab4.5_0001632g0040' => 'nta', 'Nitab4.5_0001724g0060' => 'nta', 'Nitab4.5_0002190g0010' => 'nta', 'Nitab4.5_0002415g0050' => 'nta', 'Nitab4.5_0002778g0090' => 'nta', 'Nitab4.5_0002794g0050' => 'nta', 'Nitab4.5_0003416g0010' => 'nta', 'Nitab4.5_0007719g0060' => 'nta', 'Nn1g00205' => 'nnu', 'Nn3g16865' => 'nnu', 'Nn3g19391' => 'nnu', 'Nn6g32051' => 'nnu', 'Oeu007814.1' => 'oeu', 'Oeu016384.1' => 'oeu', 'Oeu017079.2' => 'oeu', 'Oeu017080.1' => 'oeu', 'Oeu027086.1' => 'oeu', 'Oeu035991.1' => 'oeu', 'Oeu035994.2' => 'oeu', 'Oeu056405.1' => 'oeu', 'Oeu057350.1' => 'oeu', 'Oeu059133.1' => 'oeu', 'Os03g0854800' => 'osa', 'Os04g0672200' => 'osa', 'Os06g0248400' => 'osa', 'Os10g0577800' => 'osa', 'Peaxi162Scf00017g03031' => 'pax', 'Peaxi162Scf00045g00222' => 'pax', 'Peaxi162Scf00048g00193' => 'pax', 'Peaxi162Scf00170g00626' => 'pax', 'Peaxi162Scf00185g00108' => 'pax', 'Peaxi162Scf00255g01213' => 'pax', 'Peaxi162Scf00628g00064' => 'pax', 'Peaxi162Scf00710g00414' => 'pax', 'PGR031G1634' => 'pgr', 'PGR042G1398' => 'pgr', 'PGR042G2837' => 'pgr', 'PGR083G1086' => 'pgr', 'PGR083G2401' => 'pgr', 'PGSC0003DMG400004959' => 'stu', 'PGSC0003DMG400004960' => 'stu', 'PGSC0003DMG400006494' => 'stu', 'PGSC0003DMG400013476' => 'stu', 'PGSC0003DMG400013481' => 'stu', 'PGSC0003DMG400014804' => 'stu', 'PGSC0003DMG400024600' => 'stu', 'PGSC0003DMG400042652' => 'stu', 'PGSC0003DMG401016766' => 'stu', 'Phvul.002G137500' => 'pvu', 'Phvul.002G137600' => 'pvu', 'Phvul.002G245700' => 'pvu', 'Phvul.003G200500' => 'pvu', 'Phvul.009G178500' => 'pvu', 'Potri.001G137200' => 'ptr', 'Potri.002G112300' => 'ptr', 'Potri.003G096700' => 'ptr', 'Potri.005G149701' => 'ptr', 'Potri.006G231100' => 'ptr', 'Potri.006G231500' => 'ptr', 'Potri.006G231600' => 'ptr', 'Potri.012G081100' => 'ptr', 'Potri.015G076500' => 'ptr', 'Potri.018G055100' => 'ptr', 'Pp3c16_6270' => 'ppa', 'Pp3c25_950' => 'ppa', 'Pp3c2_13820' => 'ppa', 'Prupe.1G252800' => 'ppe', 'Prupe.1G543300' => 'ppe', 'Prupe.2G071200' => 'ppe', 'Prupe.5G173700' => 'ppe', 'Psat2g083680' => 'psa', 'Psat2g138080' => 'psa', 'Psat4g058080' => 'psa', 'Psat5g020000' => 'psa', 'Psat5g114720' => 'psa', 'Psat7g065080' => 'psa', 'PSO063G0423' => 'pso', 'PSO063G2255' => 'pso', 'PSO210G4064' => 'pso', 'PSO447G0379' => 'pso', 'PSO782G0693' => 'pso', 'PSO832G0736' => 'pso', 'QL01p054497' => 'qlo', 'QL03p060136' => 'qlo', 'QL08p058949' => 'qlo', 'QL08p058954' => 'qlo', 'QL10p011650' => 'qlo', 'QL12p001555' => 'qlo', 'QL12p001583' => 'qlo', 'QL12p018344' => 'qlo', 'QL12p040597' => 'qlo', 'QL93p0107_0094' => 'qlo', 'RcHm_v2.0_Chr1g0331751' => 'rch', 'RcHm_v2.0_Chr3g0452151' => 'rch', 'RcHm_v2.0_Chr4g0443761' => 'rch', 'RcHm_v2.0_Chr5g0030821' => 'rch', 'RcHm_v2.0_Chr5g0030861' => 'rch', 'RcHm_v2.0_Chr6g0248971' => 'rch', 'RcHm_v2.0_Chr7g0193541' => 'rch', 'RcHm_v2.0_Chr7g0211751' => 'rch', 'RcHm_v2.0_Chr7g0213471' => 'rch', 'RcHm_v2.0_Chr7g0232191' => 'rch', 'Rhsim04G0084100' => 'rsi', 'Rhsim06G0067200' => 'rsi', 'Rhsim07G0131700' => 'rsi', 'Rhsim07G0132000' => 'rsi', 'Rhsim08G0172100' => 'rsi', 'Rhsim11G0021100' => 'rsi', 'Rhsim12G0044600' => 'rsi', 'Rhsim12G0118200' => 'rsi', 'Rhsim12G0147700' => 'rsi', 'Rhsim12G0147800' => 'rsi', 'Rhsim12G0147900' => 'rsi', 'Rhsim12G0148000' => 'rsi', 'Rhsim12G0164600' => 'rsi', 'Sabra02G0088600' => 'sbr', 'Sabra06G0179300' => 'sbr', 'Sabra06G0179600' => 'sbr', 'Sabra12G0058000' => 'sbr', 'Sabra15G0101600' => 'sbr', 'Sabra18G0049700' => 'sbr', 'SalBow1G8121' => 'sbo', 'SalBow2G1710' => 'sbo', 'SalBow2G2071' => 'sbo', 'SalBow2G2821' => 'sbo', 'SalBow6G5846' => 'sbo', 'Sc02g0008320' => 'sci', 'Sc06g0000670' => 'sci', 'Sc09g0008190' => 'sci', 'Sc12g0005320' => 'sci', 'Sed0010568' => 'sed', 'Sed0012184' => 'sed', 'Sed0013180' => 'sed', 'Sed0016766' => 'sed', 'Sed0020361' => 'sed', 'Sed0021647' => 'sed', 'Sed0022028' => 'sed', 'SEGI_16231' => 'sgi', 'SEGI_38980' => 'sgi', 'SEGI_40732' => 'sgi', 'SGA_v2.0_scaffold114G31834' => 'sas', 'SGA_v2.0_scaffold152G36877' => 'sas', 'SGA_v2.0_scaffold198G41075' => 'sas', 'SGA_v2.0_scaffold36G14296' => 'sas', 'SGA_v2.0_scaffold7G04134' => 'sas', 'SGA_v2.0_scaffold90G27936' => 'sas', 'SHI07352' => 'shi', 'SMO328G0036' => 'smo', 'Solyc01g080820.1' => 'sly', 'Solyc03g114360.4' => 'sly', 'Solyc05g005280.4' => 'sly', 'Solyc05g005290.4' => 'sly', 'Solyc06g066330.3' => 'sly', 'Solyc08g005270.3' => 'sly', 'Solyc08g076420.3' => 'sly', 'Sopen01g030660' => 'spe', 'Sopen03g033460' => 'spe', 'Sopen04g030720' => 'spe', 'Sopen04g030730' => 'spe', 'Sopen05g001280' => 'spe', 'Sopen05g001300' => 'spe', 'Sopen06g021690' => 'spe', 'Sopen08g001290' => 'spe', 'Sopen08g025000' => 'spe', 'Sp1g20990' => 'spa', 'Sp1g27910' => 'spa', 'Sp2g25690' => 'spa', 'Sp4g17730' => 'spa', 'Sp5g14200' => 'spa', 'Sp5g25520' => 'spa', 'TAR037G0001' => 'tar', 'TAR037G0002' => 'tar', 'TAR371G0407' => 'tar', 'TAR374G0978' => 'tar', 'TAR375G0763' => 'tar', 'TAR381G0208' => 'tar', 'TAR381G0294' => 'tar', 'TAR381G0298' => 'tar', 'TAR383G0408' => 'tar', 'TAR622G0443' => 'tar', 'TAR622G1404' => 'tar', 'TAR623G1434' => 'tar', 'TAR625G0704' => 'tar', 'TAR625G1158' => 'tar', 'TAR625G1429' => 'tar', 'TAR626G0217' => 'tar', 'TAR629G1538' => 'tar', 'TAR629G2037' => 'tar', 'TAR629G2674' => 'tar', 'THA.LOC104798492' => 'tha', 'THA.LOC104814416' => 'tha', 'THA.LOC104819437' => 'tha', 'THA.LOC104822148' => 'tha', 'THA.LOC104822966' => 'tha', 'Thecc.02G251100' => 'tca', 'Thecc.03G012700' => 'tca', 'Thecc.03G309900' => 'tca', 'Thecc.04G065600' => 'tca', 'Thecc.08G080500' => 'tca', 'Thhalv10004619m.g' => 'esa', 'Thhalv10007192m.g' => 'esa', 'Thhalv10008227m.g' => 'esa', 'Thhalv10011103m.g' => 'esa', 'Thhalv10016444m.g' => 'esa', 'Thhalv10019788m.g' => 'esa', 'TPR.G12389' => 'tpr', 'TPR.G14288' => 'tpr', 'TPR.G19439' => 'tpr', 'TPR.G29299' => 'tpr', 'TPR.G29976' => 'tpr', 'TPR.G37574' => 'tpr', 'TPR.G6081' => 'tpr', 'TWI12G0160' => 'twi', 'TWI12G0344' => 'twi', 'TWI12G0531' => 'twi', 'TWI23G0831' => 'twi', 'TWI39G1074' => 'twi', 'TWI60G1711' => 'twi', 'TWI73G0900' => 'twi', 'TWI81G0168' => 'twi', 'unitig_0.g17' => 'ugi', 'unitig_0.g797' => 'ugi', 'unitig_748.g8254' => 'ugi', 'vmacro00281' => 'vma', 'vmacro01167' => 'vma', 'vmacro14198' => 'vma', 'vmacro14200' => 'vma', 'vmacro16246' => 'vma', 'vmacro16247' => 'vma', 'vmacro16473' => 'vma', 'vmacro16474' => 'vma', 'vmacro16609' => 'vma', 'vmacro19386' => 'vma', 'vmacro19387' => 'vma', 'vmacro21385' => 'vma', 'VMungo0251G3092' => 'vmu', 'VMungo1215G0290' => 'vmu', 'VMungo1215G1374' => 'vmu', 'VMungo1215G2145' => 'vmu', 'VMungo1309G1575' => 'vmu', 'Zm00001eb009570' => 'zma', 'Zm00001eb025040' => 'zma', 'Zm00001eb194830' => 'zma', 'Zm00001eb210510' => 'zma', 'Zm00001eb224950' => 'zma', 'Zm00001eb399340' => 'zma' ) $gf_id = 'HOM05D000812' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000812' ) $data_identifier = 'HOM05D000812' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 33, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 12, 'amhyb' => (int) 1, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 10, 'ath' => (int) 6, 'atr' => (int) 5, 'acertr' => (int) 9, 'cqu' => (int) 6, 'bca' => (int) 27, 'bol' => (int) 15, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 6, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 12, 'cfa' => (int) 4, 'ccl' => (int) 3, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 3, 'csa' => (int) 4, 'camsi' => (int) 14, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 37, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 12, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 5, 'lja' => (int) 14, 'lonja' => (int) 8, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 11, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 6, 'nta' => (int) 18, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 8, 'pgr' => (int) 5, 'stu' => (int) 9, 'pvu' => (int) 5, 'ptr' => (int) 10, 'ppa' => (int) 3, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 6, 'qlo' => (int) 10, 'rch' => (int) 10, 'rsi' => (int) 13, 'sbr' => (int) 6, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 1, 'sly' => (int) 7, 'spe' => (int) 9, 'spa' => (int) 6, 'tar' => (int) 19, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 8, 'ugi' => (int) 3, 'vma' => (int) 12, 'vmu' => (int) 5, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb399340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1